What Health and biology MCP servers are for
Health and biology MCP servers give an AI agent access to health records, biomedical resources, or tools for structuring information. They can support literature research, data preparation, and authorized examination of records. Biomcp provides access to biomedical resources from PubMed, ClinicalTrials.gov, and MyVariant.info. Medplum exposes healthcare data stored in its service using FHIR. You might ask: “Find publications relevant to this research question and distinguish research studies from commentary.” Other integrations work with exported personal health data or FHIR resources. The available tools determine what the agent can do; access alone does not establish clinical validity.
Example uses:
- Find biomedical publications while preserving the references needed to inspect and assess the original sources.
- Explore exported Apple Health data to prepare a descriptive summary for your own review.
- Read authorized FHIR resources to examine their structure and identify which information is available.
- Prepare FHIR resources using a tool that explicitly supports their construction and technical validation.
The category in figures
Of the 37 servers in the category (1% of the directory), 3 are official vendor implementations, 89% declare a licence, 6 offer a remote server and 6 need at least one API key or token according to the MCP registry. The median repository has 37 stars.
All Health and biology MCP servers
Click a header to sort. Score out of 100: adoption, maintenance and framework (licence, registry, official status); risk: system access, secrets, licence, abandonment.
| Server | Stars | Last commit | Licence | Risk | Score |
|---|---|---|---|---|---|
| Medplum Securely access and manage FHIR healthcare data stored in Medplum. | 2,760 | Oct 24, 2026 | Apache-2.0 | low | 85 |
| Pyscn Python code analysis for AI agents: complexity, dead code, clones, coupling, and a health score. | 1,096 | Oct 24, 2026 | MIT | low | 75 |
| Biomcp Access biomedical research data from PubMed, ClinicalTrials.gov and MyVariant.info. | 662 | Oct 24, 2026 | MIT | low | 73 |
| Apple health MCP server Access and analyze exported Apple Health data. | 279 | Jul 9, 2026 | MIT | low | 57 |
| HealthChain Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validati | 229 | Oct 19, 2026 | Apache-2.0 | low | 69 |
| Walk kcal Turns walking distance into a meal calorie budget (450 kcal + 4 kcal per 80 m; 800 m ≈ +44 kcal, about half an apple). Lists nearby restaura | 195 | Oct 22, 2026 | MIT | low | 68 |
| FHIR MCP Server (wso2) Search, retrieve, create, update and analyze clinical data via FHIR APIs, with SMART-on-FHIR authentication. | 136 | Oct 12, 2026 | Apache-2.0 | low | 71 |
| Totem Totem — talk to your wearables with AI. Today: full Whoop access (48 tools). | 135 | Sep 16, 2026 | — | high | 51 |
| Medical MCP Query medical information, drug databases, drug interactions and clinical guidelines. | 118 | Oct 15, 2026 | MIT | low | 66 |
| Intervals icu MCP Read/write Intervals.icu MCP server: activities, wellness, calendar, gear, and workouts. | 106 | Oct 18, 2026 | MIT | moderate | 65 |
| Fhir MCP server (the-momentum) Connect to FHIR servers, for example to query patient history in natural language. | 101 | Oct 23, 2025 | MIT | moderate | 37 |
| Clinicaltrialsgov MCP server Search ClinicalTrials.gov: find studies, retrieve results, match patients to candidate trials. | 98 | Oct 23, 2026 | Apache-2.0 | low | 65 |
| Codescene MCP server An MCP server that provides CodeScene Code Health analysis tools. | 72 | Oct 23, 2026 | — | moderate | 60 |
| Google health MCP Local-first access to the Google Health API for Fitbit and Pixel Watch activity, sleep, heart, nutrition and reconciled health data. | 72 | Oct 23, 2026 | MIT | moderate | 69 |
| COROS Access COROS activity, training and health data, and manage training plans and workouts. | 71 | Oct 19, 2026 | — | moderate | 54 |
| Langcare MCP fhir An MCP FHIR server written in Go for EMR systems like Epic and Cerner | 67 | Apr 14, 2026 | MIT | low | 43 |
| ChatSpatial Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization. | 45 | Oct 20, 2026 | MIT | low | 67 |
| Omop MCP Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability. | 41 | May 11, 2026 | — | moderate | 39 |
| Biothings MCP Query the BioThings API for genes, genetic variants, drugs and taxonomic information. | 37 | Nov 3, 2025 | MIT | low | 41 |
| Gget MCP Bioinformatics toolkit for genomics queries and analysis, wrapping the gget library. | 33 | Oct 27, 2025 | MIT | low | 40 |
| Fitatu Unofficial MCP server for Fitatu, the Polish calorie counter: read and log meals, weight, water, body measurements and workouts, check calor | 21 | Oct 23, 2026 | MIT | low | 63 |
| ENCODE Toolkit Search, download, track and analyze functional genomics experiments from the ENCODE Project. | 21 | Sep 27, 2026 | AGPL-3.0 | low | 63 |
| Opengenes MCP ◆ Query the OpenGenes database for aging and longevity research. | 21 | Oct 14, 2025 | MIT | moderate | 40 |
| Medical Terminologies MCP Look up medical terminologies: ICD-11, LOINC, RxNorm, MeSH, ATC, Brazil's CID-10 (DataSUS) and optionally SNOMED CT. | 15 | Oct 23, 2026 | MIT | moderate | 62 |
| Pubcrawl PubMed, Europe PMC (including preprints), FDA/DailyMed and UK eMC drug labelling, and ClinicalTrials.gov for AI assistants, including side-b | 15 | Oct 16, 2026 | MIT | moderate | 62 |
| Wellness nourish Nutrition and hydration tracking: food search, barcode lookup, meal estimation, intake logs and daily summaries. | 11 | Oct 17, 2026 | MIT | low | 60 |
| Fulcra Access personal health and biometric data (sleep stages, heart rate, HRV, glucose, workouts), calendar and location via the Fulcra Life API. | 10 | Oct 23, 2026 | Apache-2.0 | low | 66 |
| Heor agent MCP Health economics and outcomes research: literature search across PubMed, NICE, CADTH, ICER and more, cost-effectiveness modeling and HTA dos | 10 | Jun 27, 2026 | MIT | low | 48 |
| Synergy age MCP ◆ Query the SynergyAge database of synergistic and antagonistic genetic interactions in longevity. | 10 | Aug 25, 2025 | MIT | moderate | 37 |
| MetricBridge Apple Health Read-only, local-first queries of Apple Health metrics. | 8 | Oct 21, 2026 | MIT | low | 59 |
| Plant Genomics Plant genomics locus lookup across Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, NCBI BLAST and more, with batch and cross-source q | 8 | Oct 24, 2026 | MIT | low | 59 |
| OpenReadout Lets agents read raw lab-instrument files without vendor software: microscopy, mass spectrometry, chromatography, flow cytometry, NMR, elect | 8 | Oct 24, 2026 | Apache-2.0 | low | 59 |
| Ucsc genome MCP Interact with the UCSC Genome Browser API to find genomes, chromosomes and more. | 6 | Nov 13, 2025 | MIT | low | 33 |
| MCP techTrend Academic, code and medical-regulatory trend monitoring across arXiv, PubMed, GitHub, Hugging Face and openFDA, with newspaper-style briefing | 6 | Oct 24, 2026 | MIT | low | 53 |
| Quantified self MCP Query personal health and finance data stored in local SQLite files, without any cloud service. | 6 | Oct 24, 2026 | MIT | low | 53 |
| DICOM/HL7/FHIR Interoperability MCP Server Bridge DICOM, HL7v2 and FHIR: cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding and integration patterns | 5 | Jul 29, 2026 | MIT | moderate | 52 |
| FindSaunaPlunge — US cold plunge & sauna studios ◆ Cold plunge, sauna and contrast-therapy venues across US metros, with dated temperatures and prices from each venue's own pages, plus city s | 0 | Sep 5, 2026 | MIT | low | 55 |
Official servers
Published by the service's own vendor (per the awesome-mcp-servers list): they usually track the API closely and are better maintained.
Choosing and securing
Distinguish literature search, personal data analysis, and health record management. Review source coverage, supported FHIR formats, and the stated limits of validation tools. Examine hosting, permissions, traceability, and deletion options. Maintenance, licensing, and official or community ownership also matter. Technical validation does not establish medical accuracy, so look for documentation that clearly separates structural checks from interpretation and describes how records are accessed or modified.
Health records and biological data can identify individuals and reveal sensitive information. Restrict access, copying, and retention to authorized needs. Check who receives the data and what appears in application logs. Retrieved text may contain instructions intended to manipulate the agent. Changes to records and any clinical use of generated results require appropriate human review, with attention to source accuracy and the specific care context.
Before connecting a server to an agent with access to your data, run the AI agent security check.
Most recent
- Walk kcal created October 16, 2026
- OpenReadout created October 2, 2026
- FindSaunaPlunge — US cold plunge & sauna studios created August 27, 2026
- Quantified self MCP created August 25, 2026
- MetricBridge Apple Health created June 27, 2026
Other categories
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Frequently asked questions
What is the best Health and biology MCP server?
On our grid (adoption, maintenance, framework), Medplum (85/100), Pyscn (75/100), and Biomcp (73/100) come first. The right choice mostly depends on the service you need and the rights you are willing to grant.
Are these servers free?
89% declare an open-source licence and are free to use. 6 need an API key: the connected service may be paid.
Can an MCP server diagnose a condition from my data?
Access to records or publications does not establish a diagnosis. An agent may prepare a descriptive summary or retrieve references, depending on its tools. Interpreting your situation requires an appropriate clinical assessment. Check the sources and have relevant conclusions reviewed before using generated output in a medical context.
Does FHIR validation mean a record is medically correct?
Technical validation checks structure, formatting, or terminology rules, depending on the tool. It does not establish that every entry accurately describes the patient’s situation. Provenance, dates, units, and clinical consistency still need review by authorized people who can assess the record in its proper context.
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Neutrality. No affiliate links. No vendor pays to be reviewed, rated or ranked. Reviews are directed by François Chollet, neutral and factual, and every data point is dated and sourced. How we score